STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ51307.1PFAM: predicted DUF1052 protein. (145 aa)    
Predicted Functional Partners:
APZ53248.1
PFAM: Calcineurin-like phosphoesterase; TIGRFAM: metallophosphoesterase, DNA ligase-associated.
  
     0.638
APZ53249.1
ATP-dependent helicase Lhr and Lhr-like helicase; PFAM: Helicase conserved C-terminal domain; DEAD/H associated; DEAD/DEAH box helicase; TIGRFAM: DEXH box helicase, DNA ligase-associated.
  
     0.616
APZ53915.1
Lysophospholipase; PFAM: Serine aminopeptidase, S33.
  
     0.499
APZ53386.1
Hypothetical protein; PFAM: Putative bacterial sensory transduction regulator.
  
     0.437
APZ51306.1
Hypothetical protein.
       0.432
APZ52467.1
PFAM: predicted DUF2794 protein.
  
     0.426
APZ54175.1
PFAM: predicted DUF983 protein.
  
   
 0.418
APZ52703.1
Putative ABC transport system permease protein; PFAM: MacB-like periplasmic core domain; FtsX-like permease family.
  
     0.415
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.