STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ51333.1Hypothetical protein. (193 aa)    
Predicted Functional Partners:
APZ51334.1
Yip1 domain-containing protein; PFAM: Yip1 domain.
 
  
 0.948
APZ51336.1
Fe-S cluster assembly ATP-binding protein; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC.
     
 0.910
APZ51335.1
Fe-S cluster assembly protein SufD; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD.
     
 0.906
APZ51338.1
Hypothetical protein; PFAM: Putative heavy-metal-binding; Belongs to the UPF0145 family.
     
 0.872
APZ51340.1
Iron-regulated ABC transporter membrane component SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB.
     
 0.807
APZ51332.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
    0.793
APZ51337.1
Hypothetical protein.
       0.763
APZ51341.1
Cysteine desulfurase; PFAM: Aminotransferase class-V.
     
 0.727
APZ51342.1
PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein.
     
 0.611
APZ51339.1
Hypothetical protein.
       0.599
Your Current Organism:
Pelagibaca abyssi
NCBI taxonomy Id: 1250539
Other names: CGMCC 1.12376, LMG 27363, LMG:27363, P. abyssi, Pelagibaca sp. JLT2014, strain JLT2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.