AGP38881.1 protein (Sorangium cellulosum So01572)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGP38881.1

Protein kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1996 aa)

Predicted Functional Partners:

AGP37708.1

0.992

AGP36101.1

0.991

AGP32607.1

0.991

AGP38567.1

0.974

AGP32639.1

0.969

AGP36608.1

0.966

AGP32612.1

0.959

AGP41030.1

0.957

AGP41441.1

0.957

AGP40523.1

0.950

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP32607.1	AGP32612.1	SCE1572_29590	SCE1572_30115	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AGP32607.1	AGP32639.1	SCE1572_29590	SCE1572_30985	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AGP32607.1	AGP36101.1	SCE1572_29590	SCE1572_17295	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.994
AGP32607.1	AGP36608.1	SCE1572_29590	SCE1572_20180	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.996
AGP32607.1	AGP37708.1	SCE1572_29590	SCE1572_26455	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.996
AGP32607.1	AGP38567.1	SCE1572_29590	SCE1572_31285	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.994
AGP32607.1	AGP38881.1	SCE1572_29590	SCE1572_32965	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.991
AGP32607.1	AGP40523.1	SCE1572_29590	SCE1572_42080	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.994
AGP32607.1	AGP41030.1	SCE1572_29590	SCE1572_44965	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
AGP32607.1	AGP41441.1	SCE1572_29590	SCE1572_47320	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.995
AGP32612.1	AGP32607.1	SCE1572_30115	SCE1572_29590	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AGP32612.1	AGP32639.1	SCE1572_30115	SCE1572_30985	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AGP32612.1	AGP36101.1	SCE1572_30115	SCE1572_17295	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.992
AGP32612.1	AGP36608.1	SCE1572_30115	SCE1572_20180	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.994
AGP32612.1	AGP37708.1	SCE1572_30115	SCE1572_26455	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.996
AGP32612.1	AGP38567.1	SCE1572_30115	SCE1572_31285	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.979
AGP32612.1	AGP38881.1	SCE1572_30115	SCE1572_32965	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.959
AGP32612.1	AGP40523.1	SCE1572_30115	SCE1572_42080	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.990
AGP32612.1	AGP41030.1	SCE1572_30115	SCE1572_44965	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.968
AGP32612.1	AGP41441.1	SCE1572_30115	SCE1572_47320	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.983