STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJN18787.1COG family: RecA-superfamily ATPases implicated in signal transduction. (394 aa)    
Predicted Functional Partners:
SJN38930.1
TolA protein.
    
  0.701
SJN18792.1
Hypothetical protein.
       0.550
SJN40029.1
Methylcrotonyl-CoA carboxylase biotin-containing subunit.
  
     0.509
SJN43115.1
Hypothetical protein.
     
 0.447
SJN22607.1
Conserved membrane protein.
  
     0.435
SJN32755.1
Hypothetical protein.
  
  
  0.435
SJN45862.1
Putative ABC iron siderophore transporter, fused permease and ATPase domains.
  
     0.418
folE
GTP cyclohydrolase I type 1.
    
  0.411
rpmF
LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.
  
     0.411
SJN38850.1
PAS/PAC domain.
     
 0.407
Your Current Organism:
Luteococcus japonicus
NCBI taxonomy Id: 1255658
Other names: L. japonicus LSP_Lj1, Luteococcus japonicus LSP_Lj1
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