STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJN39030.1Hypothetical YciO protein, TsaC/YrdC paralog; Belongs to the SUA5 family. (207 aa)    
Predicted Functional Partners:
tsaD
TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
 
 0.925
SJN24375.1
TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA.
    
 0.789
SJN24371.1
TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA.
    
 0.759
SJN39037.1
SCC54.14, unknown, len: 316aa.
       0.718
SJN39042.1
Hypothetical protein.
       0.718
SJN39046.1
Hypothetical protein.
       0.718
SJN39023.1
Dipeptidyl carboxypeptidase Dcp.
       0.682
SJN35916.1
COG0613, Predicted metal-dependent phosphoesterases (PHP family).
    0.655
SJN27200.1
Hypothetical protein.
    
  0.539
trmD
tRNA (Guanine37-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
    
 0.530
Your Current Organism:
Luteococcus japonicus
NCBI taxonomy Id: 1255658
Other names: L. japonicus LSP_Lj1, Luteococcus japonicus LSP_Lj1
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