STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHM59168.1RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (179 aa)    
Predicted Functional Partners:
AHM59169.1
Hypothetical protein.
       0.784
AHM60011.1
Ompa/motb domain protein; COG0457 FOG: TPR repeat.
 
     0.668
AHM61443.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
  
     0.584
AHM59839.1
COG1131 ABC-type multidrug transport system, ATPase component.
  
     0.563
AHM59170.1
COG2177 Cell division protein; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
     
 0.557
AHM59171.1
Hypothetical protein.
       0.538
AHM63532.1
COG2849 Uncharacterized protein conserved in bacteria.
  
     0.537
AHM58317.1
Hypothetical protein.
  
     0.534
AHM59167.1
Metallophosphoesterase; COG1407 Predicted ICC-like phosphoesterases.
       0.520
AHM59024.1
Hypothetical protein.
  
     0.501
Your Current Organism:
Flammeovirgaceae bacterium 311
NCBI taxonomy Id: 1257021
Other names: F. bacterium 311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.