STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHM59806.1Endonuclease/exonuclease/phosphatase; COG3568 Metal-dependent hydrolase. (259 aa)    
Predicted Functional Partners:
AHM59805.1
WD40-like repeat protein; COG1409 Predicted phosphohydrolases.
 
     0.853
AHM59811.1
RagB/SusD domain-containing protein.
 
     0.648
AHM59807.1
Cell surface protein; COG3291 FOG: PKD repeat.
 
     0.616
AHM59153.1
Cysteine desulfurase-like protein, SufS subfamily; COG0520 Selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
   0.503
AHM58992.1
Trehalose-phosphatase; COG0380 Trehalose-6-phosphate synthase.
   
    0.433
AHM59812.1
TonB-dependent receptor plug.
 
     0.421
AHM59809.1
Cell surface protein; COG3291 FOG: PKD repeat.
 
     0.414
AHM59627.1
Endonuclease/exonuclease/phosphatase; COG3568 Metal-dependent hydrolase.
    
0.409
AHM62246.1
Glycoside hydrolase; COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
  
     0.400
Your Current Organism:
Flammeovirgaceae bacterium 311
NCBI taxonomy Id: 1257021
Other names: F. bacterium 311
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