STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHM60355.1Lesion bypass DNA polymerase V UmuD; COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); Belongs to the peptidase S24 family. (144 aa)    
Predicted Functional Partners:
AHM60356.1
COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair.
 
 
 0.977
recA
Reca protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.969
AHM63337.1
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
  
 0.704
dinB
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
 
 
 0.628
AHM62572.1
Hypothetical protein; COG2902 NAD-specific glutamate dehydrogenase.
  
 
 0.572
AHM60354.1
Hypothetical protein.
       0.554
AHM59991.1
Exonuclease; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
  
  
 0.488
AHM63257.1
GAF sensor hybrid histidine kinase; COG2770 FOG: HAMP domain.
     
 0.475
AHM63410.1
COG2176 DNA polymerase III, alpha subunit (gram-positive type).
  
  
 0.472
AHM60357.1
Alcohol dehydrogenase zinc-binding domain-containing protein; COG2130 Putative NADP-dependent oxidoreductases.
       0.450
Your Current Organism:
Flammeovirgaceae bacterium 311
NCBI taxonomy Id: 1257021
Other names: F. bacterium 311
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