STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHM60375.1FecR anti-FecI sigma factor; COG3712 Fe2+-dicitrate sensor, membrane component. (348 aa)    
Predicted Functional Partners:
AHM60374.1
Hypothetical protein.
 
     0.753
AHM60378.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.716
AHM60377.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
    0.678
AHM60376.1
Hypothetical protein.
       0.568
AHM62106.1
TonB-dependent siderophore receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
 
 0.560
AHM63012.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.560
AHM60267.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.525
AHM58881.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
 
 0.454
AHM61421.1
RNA polymerase, sigma-24 subunit, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.430
AHM62229.1
TonB-dependent receptor plug; COG4771 Outer membrane receptor for ferrienterochelin and colicins.
  
    0.430
Your Current Organism:
Flammeovirgaceae bacterium 311
NCBI taxonomy Id: 1257021
Other names: F. bacterium 311
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