STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHM60543.1Peptidase s41; COG0793 Periplasmic protease. (328 aa)    
Predicted Functional Partners:
AHM60544.1
Hypothetical protein.
       0.660
AHM62504.1
Interphotoreceptor retinoid-binding protein; COG0793 Periplasmic protease.
  
     0.552
AHM61119.1
Hypothetical protein; COG0457 FOG: TPR repeat.
   
 
 0.542
AHM60017.1
Hypothetical protein; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
  
   0.454
AHM60542.1
COG5485 Predicted ester cyclase.
       0.426
AHM58753.1
Hypothetical protein; COG0793 Periplasmic protease.
  
     0.400
Your Current Organism:
Flammeovirgaceae bacterium 311
NCBI taxonomy Id: 1257021
Other names: F. bacterium 311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.