AHM60690.1 protein (Flammeovirgaceae bacterium 311)

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Score

AHM60690.1

COG1881 Phospholipid-binding protein. (180 aa)

Predicted Functional Partners:

rplS

0.854

rpmA

0.850

rpmJ

0.846

rplB

0.846

rpsB

0.846

rpsJ

0.845

rplP

0.844

rnc

0.840

rpmF

0.839

rplM

0.838

Your Current Organism:

Flammeovirgaceae bacterium 311

NCBI taxonomy Id: 1257021
Other names: F. bacterium 311

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHM60690.1	rnc	D770_12165	D770_03820	COG1881 Phospholipid-binding protein.	RNAse iii; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.840
AHM60690.1	rplB	D770_12165	D770_09685	COG1881 Phospholipid-binding protein.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.846
AHM60690.1	rplM	D770_12165	D770_18890	COG1881 Phospholipid-binding protein.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.838
AHM60690.1	rplP	D770_12165	D770_09665	COG1881 Phospholipid-binding protein.	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.844
AHM60690.1	rplS	D770_12165	D770_11105	COG1881 Phospholipid-binding protein.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.854
AHM60690.1	rpmA	D770_12165	D770_15620	COG1881 Phospholipid-binding protein.	COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.850
AHM60690.1	rpmF	D770_12165	D770_05825	COG1881 Phospholipid-binding protein.	COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.839
AHM60690.1	rpmJ	D770_12165	D770_09585	COG1881 Phospholipid-binding protein.	COG0257 Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.846
AHM60690.1	rpsB	D770_12165	D770_18900	COG1881 Phospholipid-binding protein.	COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.846
AHM60690.1	rpsJ	D770_12165	D770_09705	COG1881 Phospholipid-binding protein.	30S ribosomal protein S10p; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.845
rnc	AHM60690.1	D770_03820	D770_12165	RNAse iii; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	COG1881 Phospholipid-binding protein.	0.840
rnc	rplB	D770_03820	D770_09685	RNAse iii; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.832
rnc	rplM	D770_03820	D770_18890	RNAse iii; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.876
rnc	rplP	D770_03820	D770_09665	RNAse iii; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.833
rnc	rplS	D770_03820	D770_11105	RNAse iii; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.889
rnc	rpmA	D770_03820	D770_15620	RNAse iii; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.885
rnc	rpmF	D770_03820	D770_05825	RNAse iii; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.869
rnc	rpmJ	D770_03820	D770_09585	RNAse iii; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	COG0257 Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.822
rnc	rpsB	D770_03820	D770_18900	RNAse iii; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.878
rnc	rpsJ	D770_03820	D770_09705	RNAse iii; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	30S ribosomal protein S10p; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.850