STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHM62721.1Intradiol ring-cleavage dioxygenase domain-containing protein; COG3485 Protocatechuate 3,4-dioxygenase beta subunit. (216 aa)    
Predicted Functional Partners:
AHM62272.1
Hypothetical protein.
  
     0.498
AHM63069.1
Hypothetical protein; COG0583 Transcriptional regulator.
  
     0.453
AHM62722.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
       0.437
AHM63498.1
Hypothetical protein.
  
     0.431
AHM59471.1
Phosphate-selective porin O and P; COG0256 Ribosomal protein L18.
  
     0.424
AHM58317.1
Hypothetical protein.
  
     0.422
AHM62289.1
Oxidoreductase FAD-binding domain-containing protein; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
  
 0.400
AHM62552.1
Oxidoreductase fad/nad(p)-binding domain protein; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
  
 0.400
Your Current Organism:
Flammeovirgaceae bacterium 311
NCBI taxonomy Id: 1257021
Other names: F. bacterium 311
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