STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHM63125.1COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (248 aa)    
Predicted Functional Partners:
AHM62039.1
O-methyltransferase family 3; COG4122 Predicted O-methyltransferase.
 
  
 
 0.753
AHM63126.1
COG3661 Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
       0.693
AHM58279.1
Amino acid adenylation protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.682
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
   
  
 0.625
nrfA
COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit; Belongs to the cytochrome c-552 family.
      
 0.613
nrfA-2
COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit; Belongs to the cytochrome c-552 family.
      
 0.613
AHM63665.1
Linear pentadecapeptide gramicidin synthetase LgrD; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.564
AHM63127.1
COG1609 Transcriptional regulators.
  
   0.544
AHM59592.1
COG0331 (acyl-carrier-protein) S-malonyltransferase.
 
 
 0.490
AHM63124.1
Family 10 endo-beta-xylanase; COG3693 Beta-1,4-xylanase.
       0.473
Your Current Organism:
Flammeovirgaceae bacterium 311
NCBI taxonomy Id: 1257021
Other names: F. bacterium 311
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