STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_374060Rad51l1 protein. (248 aa)    
Predicted Functional Partners:
ACA1_376610
DEAD/DEAH box helicase domain containing protein.
   
 0.996
ACA1_351280
3'5' exonuclease domain containing protein.
  
 0.955
ACA1_394580
3'5' exonuclease domain containing protein.
  
 0.955
ACA1_331590
ATPdependent DNA helicase, RecQ subfamily protein.
  
 0.955
ACA1_110350
BRCA2 repeat-containing protein.
   
 0.949
ACA1_368210
DNA repair protein XRCC3, putative.
  
 
0.921
ACA1_129950
RECA_2 domain-containing protein.
   
 0.918
ACA1_166930
RAD51, putative.
  
0.892
ACA1_071720
Meiotic recombinase Dmc1, putative; Belongs to the RecA family.
  
0.889
ACA1_188580
DNA repair and recombination protein RAD52, putative.
    
 0.886
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.