STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_274950Znfinger in Ran binding protein and others domain containing protein. (239 aa)    
Predicted Functional Partners:
ACA1_267310
PHDfinger domain containing protein.
     
 0.946
ACA1_114870
Transcription initiation factor tfiid component taf4 family protein.
   
  0.663
ACA1_209800
Transcription initiation factor tfiid subunit a protein.
   
  0.660
ACA1_020820
TATAbox-binding protein.
   
 0.652
ACA1_158460
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.642
ACA1_089850
Bromodomain domain containing protein.
     
 0.637
ACA1_066780
Transcription initiation factor tfiid subunit 13, putative.
   
 0.635
ACA1_203930
TAF11, putative.
    
  0.620
ACA1_169330
RNA polymerase Rpb5, Cterminal domain containing protein.
    
 0.618
ACA1_072640
TAFII55_N domain-containing protein.
    
  0.617
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.