STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_020100Sec1 family protein; Belongs to the STXBP/unc-18/SEC1 family. (745 aa)    
Predicted Functional Partners:
ACA1_298630
Vacuolar protein sorting 16, putative; Belongs to the VPS16 family.
   
 0.917
ACA1_094560
Pep3/Vps18/deep orange family protein.
   
 0.915
ACA1_037870
Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.
   
 0.901
ACA1_145270
7fold repeat in clathrin and VPS proteins repeat-containing protein.
    
 0.858
ACA1_182540
CNH domain containing protein.
   
 0.852
ACA1_062410
Vacuolar fusion protein ccz1 family protein.
    
 
 0.808
ACA1_360590
Uncharacterized protein; Belongs to the synaptobrevin family.
   
 
 0.679
ACA1_287700
Lethal (1), putative; Belongs to the synaptobrevin family.
   
 
 0.679
ACA1_013660
Uncharacterized protein.
   
 
 0.611
ACA1_174080
Vesicle soluble NSF attachment protein receptor VTI2, putative.
   
 
 0.611
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.