STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_271730Syntaxin 6, putative. (144 aa)    
Predicted Functional Partners:
ACA1_174080
Vesicle soluble NSF attachment protein receptor VTI2, putative.
   
 0.965
ACA1_143710
Vesicle transport V-snare protein, putative.
   
 0.965
ACA1_360590
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 0.961
ACA1_287700
Lethal (1), putative; Belongs to the synaptobrevin family.
    
 0.961
ACA1_209230
SNARE domain containing protein.
    
 0.960
ACA1_058730
Tetratricopeptide repeat domain containing protein.
    
 0.906
ACA1_207340
Syntaxinlike t-SNARE protein TLG2, putative.
    
 0.901
ACA1_108820
SNARE domain containing protein.
     
 
0.900
ACA1_208440
QaSNARE, SYP3/Sed5p/Syntaxin 5-type, putative; Belongs to the syntaxin family.
    
 0.856
ACA1_080580
Syntaxin7A, putative; Belongs to the syntaxin family.
    
 0.822
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.