STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_051940Strictosidine synthase subfamily protein. (389 aa)    
Predicted Functional Partners:
ACA1_343180
RNA polymerase Rpb3/Rpb11 dimerization domain containing protein.
  
  
 0.827
ACA1_069310
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.
  
  
 0.816
TSFM
Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
  
  
 0.755
ACA1_265570
Ribosomal proteins l2, RNA binding domain containing protein.
   
   0.746
ACA1_164710
Ribosomal protein L23, putative; Belongs to the universal ribosomal protein uL23 family.
   
    0.731
ACA1_046430
Ribosomal protein L20, putative; Belongs to the bacterial ribosomal protein bL20 family.
  
  
 0.701
ACA1_365780
Ribosomal protein S4, putative; Belongs to the universal ribosomal protein uS4 family.
  
  
 0.692
ACA1_178320
40S ribosomal protein S9.
  
  
 0.692
ACA1_291360
Ribosomal protein S11, putative.
   
  
 0.688
ACA1_264110
Ribosomal protein L3, putative; Belongs to the universal ribosomal protein uL3 family.
  
  
 0.683
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.