STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_020800Tetratricopeptide repeat domain containing protein. (526 aa)    
Predicted Functional Partners:
ACA1_071250
DEAD box RNA helicase, putative.
   
 
 0.541
ACA1_369130
HORMA domain-containing protein.
   
 
 0.527
ACA1_376610
DEAD/DEAH box helicase domain containing protein.
      
 0.525
ACA1_067980
Uncharacterized protein.
    
 
 0.498
ACA1_094390
MutS domain V domain containing protein.
   
  
 0.476
ACA1_195260
MutL dimerization domain containing protein.
    
 
 0.459
ACA1_060220
U5 small nuclear ribonucleoprotein helicase, putative.
   
 
 0.421
ACA1_068210
MutS, putative.
   
  
 0.404
ACA1_068220
DNA mismatch repair protein.
   
  
 0.404
ACA1_068200
MutS, putative.
   
  
 0.404
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.