STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_393010Histidine-tRNA ligase. (473 aa)    
Predicted Functional Partners:
ACA1_256390
Histidinol dehydrogenase; Belongs to the HisA/HisF family.
    
 0.852
ACA1_183750
Aspartate-tRNA ligase.
  
  
 0.844
ACA1_090840
ABC transporter family protein.
  
 
 0.805
ACA1_069770
Tyrosine--tRNA ligase.
  
 
 0.759
ACA1_037760
Threonine-tRNA ligase.
  
 
 0.733
ACA1_315800
Threonine-tRNA ligase.
  
 
 0.733
ACA1_093830
Isoleucine-tRNA ligase.
  
  
 0.731
ACA1_282850
Isoleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.731
ACA1_396190
Glutamine-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.729
ACA1_176860
Glnglu non-discriminatory tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.698
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.