STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_006680Arginine deiminase. (155 aa)    
Predicted Functional Partners:
ACA1_208440
QaSNARE, SYP3/Sed5p/Syntaxin 5-type, putative; Belongs to the syntaxin family.
    
 0.958
ACA1_399820
VSNARE family protein.
    
 0.955
ACA1_108290
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
    
 0.913
ACA1_260010
SNARE domain containing protein.
    
 0.899
ACA1_143280
Protein transport protein bet1, putative.
    
 0.899
ACA1_207470
Sec1 family domain containing protein; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.887
ACA1_186860
Golgi family protein, putative.
   
 0.866
ACA1_325260
Peptidylprolyl isomerase.
   
 0.815
ACA1_258690
Vesicle trafficking protein, putative; Belongs to the synaptobrevin family.
   
 0.814
ACA1_379260
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
   
 0.789
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.