STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_114770Protein kinase. (623 aa)    
Predicted Functional Partners:
ACA1_314230
Myblike DNA binding protein, putative.
    
   0.796
ACA1_366760
RNA recognition motif domain containing protein.
    
 
 0.729
ACA1_070640
RNA recognition motif domain containing protein.
    
 
 0.729
ACA1_138760
U2 snRNP auxilliary factor, large subunit, splicing factor subfamily protein.
    
 
 0.620
ACA1_281200
MOR2-PAG1_mid domain-containing protein.
    
 
 0.620
ACA1_364300
Flavin_Reduct domain-containing protein.
    
 
 0.588
ACA1_002780
RNA recognition motif domain containing protein.
    
 
 0.484
ACA1_072300
RNA recognition motif domain containing protein.
    
 
 0.484
ACA1_103140
SRI domain-containing protein.
    
 
 0.476
ACA1_093880
Splicing factor, CC1like subfamily protein.
    
 
 0.476
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.