STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_277980Mitochondrial rrna methyltransferase. (168 aa)    
Predicted Functional Partners:
ACA1_023880
Mitochondrial 39S ribosomal protein L47.
   
 
 0.726
ACA1_399950
Ribosomal protein L21, putative.
   
   0.665
ACA1_306860
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 
 0.660
ACA1_179980
Mitochondrial ribosomal protein L51/S25/CIB8 family protein.
    
   0.647
ACA1_368670
Mitochondrial GTPase 1.
  
 
 0.609
ACA1_203760
60S ribosomal protein L23, putative; Belongs to the universal ribosomal protein uL14 family.
   
   0.549
ACA1_191550
Ribosomal protein L13, putative.
  
 
 0.548
ACA1_315760
Ribosomal protein L13, putative.
  
 
 0.548
ACA1_058860
Ribosomal protein L15, putative.
  
   0.540
ACA1_376690
60S ribosomal protein L27a, putative; Belongs to the universal ribosomal protein uL15 family.
  
   0.540
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.