STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_186720MYND finger domain containing protein. (362 aa)    
Predicted Functional Partners:
ACA1_048210
Ribosomal protein S5, putative; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.733
ACA1_074850
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.733
ACA1_263860
Ribosomal protein s5, nterminal subfamily protein; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.602
ACA1_091890
Zinc finger, c2h2 type domain containing protein.
   
 
 0.515
ACA1_189820
Protein bcp1, putative.
   
  
 0.478
ACA1_182910
RNA recognition motif domain containing protein.
      
 0.442
ACA1_072290
Low temperature viability protein.
   
  
 0.428
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.