STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_142620ATPdependent RNA helicase dbp2, putative; Belongs to the DEAD box helicase family. (706 aa)    
Predicted Functional Partners:
ACA1_368870
ATPdependent RNA helicase DBP2, putative; Belongs to the DEAD box helicase family.
  
  
 
0.903
ACA1_158170
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.782
ACA1_204440
Uncharacterized protein.
   
 0.759
ACA1_379230
RNA recognition motif domain containing protein.
   
 0.737
ACA1_166220
rRNA-processing protein EBP2, putative.
   
 0.725
ACA1_194930
Matrix attachment region binding protein.
  
 
 0.694
ACA1_266080
DEAD/DEAH box helicase/helicase conserved Cterminal domain containing protein; Belongs to the DEAD box helicase family.
  
0.688
ACA1_326230
Peptidylprolyl cis-trans isomerase, cyclophilin-type domain containing protein.
  
 0.674
ACA1_273540
G domain-containing protein.
  
 0.669
ACA1_273780
CP-type G domain-containing protein.
  
 0.669
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.