STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_252500COMM domain containing protein 6, putative. (78 aa)    
Predicted Functional Partners:
ACA1_157750
COMM domain containing 9, putative.
    
 0.981
ACA1_037120
COMM domain containing protein 2, putative.
   
 0.935
ACA1_098070
HCaRG protein.
   
 0.930
ACA1_086520
COMM domain containing protein 1, putative.
  
 0.920
ACA1_224420
COMM domain containing protein 1, putative.
  
 0.920
ACA1_111090
Coiledcoil domain containing protein.
    
 0.845
ACA1_111100
Uncharacterized protein.
    
 0.845
ACA1_319110
Fidipidine, putative.
   
 
 0.827
ACA1_219480
Uncharacterized protein.
    
 
 0.813
ACA1_279580
Interferonrelated developmental regulator 1, putative.
    
 0.791
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.