STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_141790Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (460 aa)    
Predicted Functional Partners:
ACA1_266780
Ribosomal RNA large subunit methyltransferase J, putative.
   
 
 0.996
ACA1_204440
Uncharacterized protein.
   
 
 0.994
ACA1_365420
HEAT repeat domain containing protein.
   
 
 0.993
ACA1_158170
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
   0.989
ACA1_378220
Ribosomal L18p/L5e family.
   
 
 0.986
ACA1_175720
RNA recognition motif domain containing protein.
   
 
 0.984
ACA1_164710
Ribosomal protein L23, putative; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.982
ACA1_368030
Brix domain containing protein.
   
 
 0.979
ACA1_264110
Ribosomal protein L3, putative; Belongs to the universal ribosomal protein uL3 family.
   
   0.979
ACA1_334790
Ribosomal protein L32, putative.
   
   0.974
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.