STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_396530Nucleoporin 54, putative. (240 aa)    
Predicted Functional Partners:
ACA1_091430
Znfinger in Ran binding protein and others domain containing protein.
   
 0.999
ACA1_070550
Nucleoporin, putative.
  
 0.998
ACA1_291540
Nuclear pore protein.
   
 0.997
ACA1_178480
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.992
ACA1_112580
Nuclear pore glycoprotein p62, putative.
   
 0.992
ACA1_150010
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.991
ACA1_260060
Sec13like protein; Belongs to the WD repeat SEC13 family.
   
 0.978
ACA1_189310
RanBP2-type domain-containing protein.
   
 0.966
ACA1_366110
MPPN (Rrmlike) domain containing protein.
   
 0.964
ACA1_061100
SEC13like protein; Belongs to the WD repeat SEC13 family.
    
 0.955
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.