STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_141550Ribosome biogenesis GTPase Der, putative. (687 aa)    
Predicted Functional Partners:
ACA1_174510
tRNA uridine 5carboxymethylaminomethyl modification enzyme GidA, putative.
  
 0.815
ACA1_058860
Ribosomal protein L15, putative.
    
 
 0.801
ACA1_368670
Mitochondrial GTPase 1.
  
 
 0.773
ACA1_399950
Ribosomal protein L21, putative.
   
 
 0.771
ACA1_191550
Ribosomal protein L13, putative.
    
 
 0.766
ACA1_188570
Golgi family protein, putative.
  
 0.758
ACA1_265950
Golgi family protein, putative.
  
 0.758
ACA1_040520
Golgi family protein, putative.
  
 0.758
ACA1_142680
Serologically defined breast cancer antigen 84 isoform 1, putative.
  
 0.758
ACA1_151080
Ribosomal protein L3, putative; Belongs to the universal ribosomal protein uL3 family.
    
 
 0.724
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.