STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_069550Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family. (197 aa)    
Predicted Functional Partners:
ACA1_399950
Ribosomal protein L21, putative.
  
 
 0.823
ACA1_046430
Ribosomal protein L20, putative; Belongs to the bacterial ribosomal protein bL20 family.
  
 
 0.790
ACA1_095890
Ribosomal protein L27, putative.
  
   0.783
ACA1_370280
Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family.
  
   0.781
ACA1_218650
Ribosomal protein L9, Nterminal domain containing protein.
  
   0.777
ACA1_097960
Ribosomal protein L33, putative.
   
   0.776
ACA1_174430
Ribosomal protein S15, putative; Belongs to the universal ribosomal protein uS15 family.
   
   0.775
ACA1_034540
Ribosomal protein S13p/S18e, putative; Belongs to the universal ribosomal protein uS13 family.
  
   0.773
ACA1_067910
Ribosomal protein S19, putative; Belongs to the universal ribosomal protein uS19 family.
    
 
 0.770
ACA1_149890
Ribosomal protein S7p/S5e, putative; Belongs to the universal ribosomal protein uS7 family.
   
   0.769
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.