STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_172730PKD domain containing protein. (548 aa)    
Predicted Functional Partners:
ACA1_093730
RNA polymerase subunit.
  
 
 0.736
ACA1_271270
Atpdependent rna helicase ddx6, putative; Belongs to the DEAD box helicase family.
  
 0.716
ACA1_134990
Small nuclear ribonucleoprotein Sm D3.
   
 0.703
ACA1_290990
HnRNPL/PTB/hephaestus splicing factor subfamily protein.
    
 0.698
ACA1_343180
RNA polymerase Rpb3/Rpb11 dimerization domain containing protein.
   
 
 0.687
ACA1_158460
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.677
ACA1_061520
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.676
ACA1_369110
Small nuclear ribonucleoprotein G.
    
  0.674
ACA1_077140
Nuclear cap-binding protein subunit 2.
   
  0.670
ACA1_002780
RNA recognition motif domain containing protein.
  
 0.656
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.