STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_175320RNA recognition motif domain containing protein. (964 aa)    
Predicted Functional Partners:
ACA1_333280
Gpatch domain containing protein.
   
 0.942
ACA1_354490
Uncharacterized protein.
   
 0.940
ACA1_224690
DEAD/DEAH box helicase domain containing protein.
   
 0.906
ACA1_212970
Uncharacterized protein.
    
  0.844
ACA1_376250
PHD finger protein.
   
  0.835
ACA1_295440
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.807
ACA1_369110
Small nuclear ribonucleoprotein G.
   
 0.799
ACA1_258290
Uncharacterized protein.
    
 0.792
ACA1_101400
Splicing factor 3a subunit 2, putative.
    
 0.792
ACA1_120560
U2 snRNP component prp10, putative.
   
 0.792
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.