STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_295780Longin domain-containing protein; Belongs to the synaptobrevin family. (239 aa)    
Predicted Functional Partners:
ACA1_358660
SH3 domain containing protein.
     
 0.654
ACA1_107430
RhoGEF domain containing protein.
     
 0.654
ACA1_112020
RhoGEF domain containing protein.
     
 0.654
ACA1_175570
RhoGEF domain containing protein.
     
 0.654
ACA1_282990
Uncharacterized protein.
    
 0.556
ACA1_296350
C2 domain containing protein.
    
 0.556
ACA1_171230
Arf GTPase activating protein.
    
 0.506
ACA1_298630
Vacuolar protein sorting 16, putative; Belongs to the VPS16 family.
    
 
 0.487
ACA1_154720
SNARE domain containing protein.
    
 0.486
ACA1_142320
t-SNARE coiled-coil homology domain-containing protein.
    
 0.486
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.