Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
D920_00066CAT RNA binding domain protein. (50 aa)    
Predicted Functional Partners:
D920_00065
Hypothetical protein; KEGG: lml:lmo4a_2784 9.2e-32 glucosamine-6-phosphate isomerase/deaminase, putative; Psort location: Cytoplasmic, score: 7.50.
       0.689
D920_00064
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; KEGG: ssp:SSP1317 2.0e-13 PTS system glucose-specific IIA component; K02777 PTS system, glucose-specific IIA component; Psort location: Cytoplasmic, score: 9.97.
       0.408
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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