Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00098Hypothetical protein. (115 aa)    
Predicted Functional Partners:
D920_00094
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.773
D920_00095
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.773
D920_00096
Phage hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.773
D920_00097
Phosphocarrier protein HPr domain protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.773
D920_00099
Helicase protein; KEGG: afm:AFUA_7G05530 7.9e-43 DEAD/DEAH box helicase K01529; Psort location: Cytoplasmic, score: 7.50.
       0.773
D920_00100
Hypothetical protein.
       0.757
D920_00101
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.757
D920_00102
Hypothetical protein.
       0.746
D920_00103
Hypothetical protein; KEGG: ccv:CCV52592_0667 0.00090 3-methyl-2-oxobutanoate hydroxymethyltransferase K09687.
       0.730
D920_00104
Hypothetical protein; KEGG: edi:EDI_048910 9.6e-09 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 7.50.
       0.730
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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