Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00137KEGG: esi:Exig_1578 2.0e-98 IS605 family transposase OrfB K07496; Psort location: CytoplasmicMembrane, score: 9.55. (403 aa)    
Predicted Functional Partners:
D920_00136
Transposase-like protein; KEGG: cnc:CNE_2c19700 1.8e-12 DNA (cytosine-5-)-methyltransferase K07491.
 
   
 0.991
D920_00121
Transposase-like protein; KEGG: cnc:CNE_2c19700 4.5e-07 DNA (cytosine-5-)-methyltransferase K07491; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.951
D920_03051
Putative oligopeptide ABC transporter, permease protein OppC; KEGG: smq:SinmeB_4208 5.6e-44 nickel-transporting ATPase K02031:K02034; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.933
D920_03052
Putative oligopeptide transport system permease protein OppB; KEGG: csc:Csac_1028 6.4e-63 Nickel-transporting ATPase K15581; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.932
D920_03049
KEGG: efu:HMPREF0351_12262 1.8e-147 dppF; oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein; Psort location: CytoplasmicMembrane, score: 9.96.
       0.925
D920_03053
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.924
D920_02417
Cof-like hydrolase; KEGG: ctu:CTU_14460 1.1e-56 ybjI; phosphatase ybjI K07024.
 
     0.920
D920_00328
Transposase-like protein; KEGG: cnc:CNE_2c19700 5.9e-05 DNA (cytosine-5-)-methyltransferase K07491.
 
   
 0.918
infC
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
       0.856
D920_01037
KEGG: efc:EFAU004_00134 1.2e-166 peptide ABC transporter ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.96.
       0.856
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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