Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_00147Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (177 aa)    
Predicted Functional Partners:
D920_00143
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.992
D920_00145
Phage protein, HK97 gp10 family; Psort location: Cytoplasmic, score: 7.50.
       0.992
D920_00149
Hypothetical protein; KEGG: edi:EDI_048910 0.0071 intracellular protein transport protein USO1.
       0.972
D920_00140
Hypothetical protein.
       0.971
D920_00307
Phage tail component protein.
       0.873
D920_01751
Phage minor structural protein; KEGG: bya:BANAU_2611 1.2e-06 lytG; N-acetylmuramoyl-L-alanine amidase.
       0.847
D920_01742
Phage protein, HK97 gp10 family.
       0.843
D920_00138
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.837
D920_00308
Putative ATP synthase F0, A subunit; KEGG: sea:SeAg_B1257 8.7e-11 leucine-rich repeat protein; K15353 E3 ubiquitin-protein ligase SspH2; Psort location: CytoplasmicMembrane, score: 10.00.
       0.820
D920_00135
YD repeat protein; KEGG: phu:Phum_PHUM617500 0.0010 type II transmembrane protein, putative; Psort location: Cellwall, score: 9.20.
       0.819
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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