Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00152Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (364 aa)    
Predicted Functional Partners:
D920_00151
Coenzyme F420 hydrogenase domain protein.
       0.773
D920_00083
Putative phage portal protein, SPP1 Gp6; KEGG: ame:408348 0.0015 putative rRNA methyltransferase 3-like; K14857 AdoMet-dependent rRNA methyltransferase SPB1; Psort location: Cytoplasmic, score: 7.50.
  
     0.687
D920_00307
Phage tail component protein.
  
     0.620
D920_01759
Hypothetical protein.
  
     0.605
D920_00150
Hypothetical protein.
       0.601
D920_00306
Hypothetical protein.
  
     0.596
D920_00305
Hypothetical protein.
  
     0.569
D920_00082
Hypothetical protein.
 
      0.443
D920_00149
Hypothetical protein; KEGG: edi:EDI_048910 0.0071 intracellular protein transport protein USO1.
       0.406
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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