Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_00173Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55. (40 aa)    
Predicted Functional Partners:
D920_00171
PTS system mannose-specific EIIAB component domain protein; KEGG: efu:HMPREF0351_12881 5.6e-64 PTS family mannose/fructose/sorbose porter component IIB K02794; Psort location: Cytoplasmic, score: 9.97.
       0.562
D920_00172
KEGG: efu:HMPREF0351_12880 1.2e-36 PTS system mannose/fructose/sorbose transporter subunit IIA K02793; Psort location: Cytoplasmic, score: 7.50.
       0.562
D920_00170
KEGG: efu:HMPREF0351_12882 7.5e-108 PTS system transporter subunit IIC K02795; Psort location: CytoplasmicMembrane, score: 10.00.
       0.531
D920_00169
Mannose permease IID component domain protein; KEGG: efu:HMPREF0351_12883 1.1e-72 PTS system mannose/fructose/sorbose transporter subunit IID K02796; Psort location: CytoplasmicMembrane, score: 9.99.
       0.511
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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