Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_00231Hypothetical protein; KEGG: spn:SP_0664 1.0e-05 zinc metalloprotease ZmpB; K08643 zinc metalloprotease ZmpB; Psort location: Cellwall, score: 9.21. (955 aa)    
Predicted Functional Partners:
D920_00135
YD repeat protein; KEGG: phu:Phum_PHUM617500 0.0010 type II transmembrane protein, putative; Psort location: Cellwall, score: 9.20.
   
 0.955
D920_01806
YD repeat protein; Psort location: Cellwall, score: 9.20.
     0.942
D920_02913
Carbohydrate binding domain protein; KEGG: lmy:LM5923_2862 3.0e-175 hypothetical protein; K01183 chitinase.
 
 
 0.940
D920_00134
YD repeat protein; KEGG: phu:Phum_PHUM617500 1.1e-17 type II transmembrane protein, putative; Psort location: Cellwall, score: 9.94.
     0.927
D920_01520
KEGG: efc:EFAU004_02618 2.5e-242 serine/threonine-protein kinase K08884; Psort location: CytoplasmicMembrane, score: 8.78.
  
 
 0.923
smc
Segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
 
 0.913
D920_00129
Hypothetical protein.
  
  
 0.878
D920_00233
Sortase, SrtB family; KEGG: cle:Clole_4031 7.9e-26 peptidase C60 sortase A and B; K08600 sortase B; Psort location: Cytoplasmic, score: 7.50.
       0.865
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
       0.838
D920_02361
Ankyrin repeat protein; KEGG: eci:UTI89_C0348 4.3e-25 yahD; transcription factor K06867.
  
  
 0.834
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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