Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00249Hypothetical protein; KEGG: lhl:LBHH_1000 0.0014 Cell envelope-associated proteinase; K01361 lactocepin. (575 aa)    
Predicted Functional Partners:
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.941
D920_00238
Hypothetical protein; KEGG: sud:ST398NM01_1060 4.6e-08 Chitinase.
 
   
 0.911
D920_00248
Hypothetical protein.
 
   
 0.911
D920_00041
MucBP domain protein; KEGG: edi:EDI_048910 0.00042 intracellular protein transport protein USO1.
 
   
 0.907
D920_01520
KEGG: efc:EFAU004_02618 2.5e-242 serine/threonine-protein kinase K08884; Psort location: CytoplasmicMembrane, score: 8.78.
  
  
 0.874
D920_00601
KEGG: efc:EFAU004_02112 8.3e-102 N-acetylmuramoyl-L-alanine amidase K01448; Psort location: Cellwall, score: 8.75.
  
  
 0.870
D920_01540
ABC transporter, substrate-binding protein; KEGG: saj:SaurJH9_2430 1.2e-38 ribulose-phosphate 3-epimerase K01783; Psort location: CytoplasmicMembrane, score: 8.78; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.865
D920_03111
Manganese ABC transporter substrate-binding lipoprotein; KEGG: sah:SaurJH1_2478 2.9e-19 ribulose-phosphate 3-epimerase K01783; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.865
D920_00023
Hypothetical protein.
  
 
 0.859
D920_00162
Hypothetical protein; KEGG: bha:BH2080 8.6e-08 wprA; cell wall-associated protease; K13274 cell wall-associated protease.
  
 
 0.859
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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