Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00259Hypothetical protein; KEGG: efc:EFAU004_01762 6.0e-51 ISEfa7, transposase; Psort location: Cytoplasmic, score: 7.50. (200 aa)    
Predicted Functional Partners:
D920_00260
Transposase, IS4 family; KEGG: efc:EFAU004_01762 6.5e-54 ISEfa7, transposase; Psort location: Cytoplasmic, score: 7.50.
 
     0.976
D920_00129
Hypothetical protein.
  
  
 0.884
D920_00226
Hypothetical protein; KEGG: efc:EFAU004_01781 8.1e-24 ISEfa7, transposase; Psort location: CytoplasmicMembrane, score: 9.55.
  
     0.774
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.771
D920_00058
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.35.
     
 0.749
D920_00291
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
     
 0.749
D920_01001
KEGG: ppo:PPM_p0279 4.1e-13 sigW; ECF subfamily RNA polymerase sigma-70 factor K03088; Psort location: Cytoplasmic, score: 7.50.
     
 0.749
D920_01557
Sigma-70 region 2; KEGG: crn:CAR_c24720 9.3e-23 sigH; RNA polymerase factor sigma-70 K03091; Psort location: Cytoplasmic, score: 7.50.
     
 0.749
pyrF
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
       0.740
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
     
 0.728
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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