Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00261Transcriptional regulator, MarR family; KEGG: cnc:CNE_2c15760 4.8e-06 ampC2; beta-lactamase AmpC; Psort location: Cytoplasmic, score: 7.50. (161 aa)    
Predicted Functional Partners:
D920_00262
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
 
  
 0.993
D920_00403
Multidrug export protein MepA domain protein; KEGG: rlt:Rleg2_4805 1.1e-09 MATE efflux family protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.985
D920_02613
KEGG: efi:OG1RF_10412 2.1e-158 ABC superfamily ATP binding cassette transporter, membrane protein K05845:K05846; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.973
D920_02077
KEGG: efi:OG1RF_12271 7.5e-211 cdr; coA-disulfide reductase; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.937
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.933
D920_01522
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
     
 0.915
D920_01967
Pyruvate synthase; KEGG: efu:HMPREF0351_11628 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.905
ribA
GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
  
  
 0.895
D920_01539
ABC transporter, ATP-binding protein; KEGG: efu:HMPREF0351_12583 7.3e-110 zinc ABC superfamily ATP binding cassette transporter, ABC protein K09817; Psort location: CytoplasmicMembrane, score: 8.78.
  
  
 0.885
D920_01770
KEGG: efc:EFAU004_00424 0. ABC transporter ATP-binding protein/permease; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.881
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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