Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00288Hypothetical protein; Psort location: Extracellular, score: 8.91. (166 aa)    
Predicted Functional Partners:
D920_00286
Hypothetical protein.
 
   
 0.996
D920_00287
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
     0.968
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
       0.939
pheT
KEGG: efu:HMPREF0351_11283 0. pheT3; phenylalanine--tRNA ligase beta subunit K01890; Psort location: Cytoplasmic, score: 9.97; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.917
D920_00289
Hypothetical protein.
 
     0.915
D920_00418
N-6 DNA Methylase; KEGG: smn:SMA_1208 6.8e-59 hsdM; type I restriction-modification system, DNA-methyltransferase subunit M; K03427 type I restriction enzyme M protein; Psort location: Cytoplasmic, score: 7.50.
     
 0.895
D920_00132
Fic family protein; KEGG: dan:Dana_GF18177 0.0014 GF18177 gene product from transcript GF18177-RA; K01887 arginyl-tRNA synthetase; Psort location: Cytoplasmic, score: 7.50.
 
     0.857
D920_00008
Hypothetical protein; KEGG: dan:Dana_GF13333 2.6e-12 GF13333 gene product from transcript GF13333-RA; K00907 myosin-light-chain kinase; Psort location: Cytoplasmic, score: 7.50.
 
     0.844
D920_00099
Helicase protein; KEGG: afm:AFUA_7G05530 7.9e-43 DEAD/DEAH box helicase K01529; Psort location: Cytoplasmic, score: 7.50.
       0.840
D920_00030
Death-on-curing family protein; KEGG: pdn:HMPREF9137_0457 1.0e-05 purC_2; phosphoribosylaminoimidazole succinocarboxamide synthase.
 
     0.831
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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