Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
D920_00328Transposase-like protein; KEGG: cnc:CNE_2c19700 5.9e-05 DNA (cytosine-5-)-methyltransferase K07491. (134 aa)    
Predicted Functional Partners:
D920_00120
KEGG: esi:Exig_1578 2.4e-79 IS605 family transposase OrfB K07496; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.919
D920_00137
KEGG: esi:Exig_1578 2.0e-98 IS605 family transposase OrfB K07496; Psort location: CytoplasmicMembrane, score: 9.55.
 
   
 0.918
D920_00129
Hypothetical protein.
     
 0.904
D920_02457
KEGG: efc:EFAU004_01014 1.2e-269 recJ; single-stranded-DNA-specific exonuclease RecJ K07462; Psort location: Cytoplasmic, score: 7.50.
       0.901
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.893
D920_00538
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
       0.881
D920_00032
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
     
 0.875
D920_01456
KEGG: apb:SAR116_0666 2.3e-19 DNA repair protein RadC K03630; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0758 family.
     
 0.858
D920_00135
YD repeat protein; KEGG: phu:Phum_PHUM617500 0.0010 type II transmembrane protein, putative; Psort location: Cellwall, score: 9.20.
     
 0.819
D920_00418
N-6 DNA Methylase; KEGG: smn:SMA_1208 6.8e-59 hsdM; type I restriction-modification system, DNA-methyltransferase subunit M; K03427 type I restriction enzyme M protein; Psort location: Cytoplasmic, score: 7.50.
     
 0.818
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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