Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_00351Hypothetical protein. (112 aa)    
Predicted Functional Partners:
mnmG
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
       0.992
mnmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.992
D920_00411
FeS assembly ATPase SufC; KEGG: thl:TEH_05630 4.1e-116 sufC; iron-sulfur cluster assembly ATPase SufC K09013; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.933
D920_02202
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
     
 0.905
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.891
D920_00793
Pyruvate kinase; KEGG: efc:EFAU004_01291 6.6e-299 Pyruvate kinase K00873; Psort location: Cytoplasmic, score: 7.50.
       0.885
D920_01465
Aminotransferase, class V; KEGG: efu:HMPREF0351_12189 8.3e-173 iscS2; pyridoxal phosphate-dependent transferase K04487; Psort location: Cytoplasmic, score: 9.97.
     
 0.868
D920_03079
KEGG: efc:EFAU004_00538 3.2e-155 Putative cysteine desulfurase K04487; Psort location: Cytoplasmic, score: 9.97.
     
 0.868
D920_00412
KEGG: suc:ECTR2_773 9.0e-41 sufB; feS assembly protein SufB K09014; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.863
D920_00415
KEGG: efl:EF62_2612 6.2e-239 sufB; FeS assembly protein SufB K09014; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.863
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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