Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00370EDD domain protein, DegV family; KEGG: mgf:MGF_3873 5.1e-15 DegV-like protein; Psort location: Cytoplasmic, score: 7.50. (287 aa)    
Predicted Functional Partners:
D920_01041
DAK2 domain fusion protein YloV; KEGG: efu:HMPREF0351_10092 7.3e-252 dhaK; glycerone kinase K07030; Psort location: Cytoplasmic, score: 7.50.
 
 0.999
D920_00368
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
       0.988
D920_02303
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.974
cysS
cysteine--tRNA ligase; KEGG: efc:EFAU004_02655 1.8e-223 cysS; cysteinyl-tRNA synthetase K01883; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.972
D920_01559
KEGG: efu:HMPREF0351_12600 8.5e-116 TrmH family tRNA/rRNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase; Psort location: Cytoplasmic, score: 7.50; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
    0.969
D920_01558
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.967
rpsI
Ribosomal protein S9; KEGG: apb:SAR116_0492 1.1e-28 30S ribosomal protein S9 K02996; Psort location: Cytoplasmic, score: 9.67; Belongs to the universal ribosomal protein uS9 family.
       0.967
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.967
D920_02836
Channel protein, hemolysin III family; KEGG: lai:LAC30SC_04890 0.00066 tRNA CCA-pyrophosphorylase K00974; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.967
D920_02589
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.965
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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