Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00375Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (193 aa)    
Predicted Functional Partners:
D920_00374
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.995
D920_01573
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.956
D920_00957
KEGG: efu:HMPREF0351_10155 5.6e-80 Sir2 family transcriptional regulator K12410; Psort location: Cytoplasmic, score: 7.50.
       0.907
D920_01471
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 8.16.
       0.830
D920_00640
Hypothetical protein.
 
     0.820
D920_02740
Riboflavin biosynthesis protein RibD protein; KEGG: efu:HMPREF0351_11838 5.8e-62 folA2; dihydrofolate reductase; Psort location: Cytoplasmic, score: 7.50.
       0.800
D920_01796
Hypothetical protein; KEGG: snc:HMPREF0837_11378 1.0e-16 ABC transporter ATP-binding protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.790
D920_00641
KEGG: efc:EFAU004_02068 7.5e-37 GNAT family acetyltransferase K06975; Psort location: Cytoplasmic, score: 7.50.
       0.788
D920_02295
NAD dependent epimerase/dehydratase family protein; KEGG: efu:HMPREF0351_12357 1.5e-72 flavin reductase K07118.
 
     0.788
D920_02212
Glyoxalase family protein; KEGG: crn:CAR_c17130 1.3e-18 catE; catechol-2,3-dioxygenase subunit K07104; Psort location: Cytoplasmic, score: 7.50.
       0.757
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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