Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00387Hypothetical protein. (73 aa)    
Predicted Functional Partners:
D920_00980
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.880
D920_00978
Hypothetical protein; KEGG: efu:HMPREF0351_12771 3.9e-15 DNA-directed DNA polymerase K03502.
       0.821
D920_00979
ImpB/MucB/SamB family protein; KEGG: efc:EFAU004_00480 1.6e-167 DNA directed DNA polymerase K03502; Psort location: Cytoplasmic, score: 7.50; Belongs to the DNA polymerase type-Y family.
       0.821
D920_00388
Transcriptional regulator, GntR family; KEGG: bya:BANAU_0474 8.4e-61 ydeF; Serine hydroxymethyltransferase Serine methylase; Psort location: Cytoplasmic, score: 9.97.
       0.661
dinB
Putative DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
       0.585
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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