Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00430KEGG: zga:zobellia_326 6.6e-45 FAD dependent oxidoreductase; Psort location: CytoplasmicMembrane, score: 9.92. (469 aa)    
Predicted Functional Partners:
D920_01967
Pyruvate synthase; KEGG: efu:HMPREF0351_11628 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.998
D920_00433
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.996
D920_00431
Citrate transporter; KEGG: apb:SAR116_0058 2.0e-07 TRAP dicarboxylate transporter subunit DctM; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.993
D920_00432
Hydantoinase/oxoprolinase; KEGG: efu:HMPREF0351_10234 3.9e-150 hyuA; N-methylhydantoinase; Psort location: Cytoplasmic, score: 7.50.
 
     0.990
D920_01313
Methyltransferase domain protein; KEGG: efu:HMPREF0351_10904 4.1e-203 methyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.982
D920_03101
Hydantoinase/oxoprolinase; KEGG: efu:HMPREF0351_10234 0. hyuA; N-methylhydantoinase; Psort location: Cytoplasmic, score: 7.50.
 
     0.965
pyrH
UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
  
  
 0.964
D920_01370
Geranyltranstransferase; KEGG: efu:HMPREF0351_10781 3.6e-101 ispA; geranyltranstransferase K13789; Psort location: Cytoplasmic, score: 9.95; Belongs to the FPP/GGPP synthase family.
  
 
 0.961
D920_01675
Polyprenyl synthetase; KEGG: efu:HMPREF0351_12674 1.8e-136 hepT; trans-hexaprenyltranstransferase K00805; Psort location: Cytoplasmic, score: 9.97; Belongs to the FPP/GGPP synthase family.
  
 
 0.961
D920_01258
Beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
     
 0.957
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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